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Afgan, Enis; Chapman, Brad; Taylor, James (2012) CloudMan as a platform for tool, data, and analysis distribution. BMC bioinformatics, 13 (315). pp. 1-7. ISSN 1471-2105
Afgan, Enis; Skala, Karolj; Davidović, Davor; Lipić, Tomislav; Sović, Ivan (2012) CloudMan as a tool execution framework for the cloud. In: Biljanović, Petar; Skala, Karolj, (eds.) MIPRO, 2012 Proceedings of the 35th International Convention. pp. 437-441 .
Aliaga, José; Davidović, Davor; Pérez, Joaquín; Quintana-Ortí, Enrique S. (2016) Harnessing CUDA dynamic parallelism for the solution of sparse linear systems. In: Joubert, Gerhard; Leather, Hugh; Peters, Frans; Parsons, Mark; Sawyer, Mark, (eds.) Parallel computing : on the road to exascale. pp. 217-226 .
Aliaga, José I.; Alonso, Pedro; Badía, José M.; Chacón, Pablo; Davidović, Davor; López-Blanco, José R.; Quintana-Ortí, Enrique S. (2016) Fast band-Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors. Journal of computational physics, 309 . pp. 314-323. ISSN 0021-9991
Aliaga, José Ignacio; Badia, Jose M.; Castillo, Maribel; Davidović, Davor; Mayo, Rafael; Quintana-Ortí, Enrique S. (2015) Out-of-core macromolecular simulations on multithreaded architectures. Concurrency and Computation: Practice and Experience, 27 (6). pp. 1540-1550. ISSN 1532-0626
Alonso-Jordá, Pedro; Davidović, Davor; Sapunar, Marin; Herrero, José R.; Quintana-Ortí, Enrique S. (2021) Efficient update of determinants for many-electron wave function overlaps. Computer physics communications, 258 . ISSN 0010-4655
Antulov-Fantulin, Nino Modeliranje strukture kompleksne mreže i dinamičkih procesa. In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
Antulov-Fantulin, Nino; Lančić, Alen; Šmuc, Tomislav; Štefančić, Hrvoje; Šikić, Mile (2015) Identification of Patient Zero in Static and Temporal Networks : Robustness and Limitations. Physical Review Letters, 114 . pp. 248701-1. ISSN 0031-9007
Antulov-Fantulin, Nino; Lančić, Alen; Štefančić, Hrvoje; Šmuc, Tomislav; Šikić, Mile (2014) Supporting Data and Code: Detectability limits of epidemic sources in networks. [Dataset] (Unpublished)
Bakarić, Robert; Korenčić, Damir; Hršak, Dalibor; Ristov, Strahil (2022) SFQ: Constructing and Querying a Succinct Representation of FASTQ Files. Electronics, 11 (11). ISSN 2079-9292
Barić, Domjan; Fumić, Petar; Horvatić, Davor; Lipić, Tomislav (2021) Benchmarking attention-based interpretability of deep learning in multivariate time series predictions. Entropy (Basel. Online), 23 (2). ISSN 1099-4300
Blankenberg, Daniel; Kuster, Gregory Von; Bouvier, Emil; Baker, Dannon; Afgan, Enis; Stoler, Nicholas; Taylor, James; Nekrutenko, Anton (2014) Dissemination of scientific software with Galaxy ToolShed. Genome Biology, 15 (2). pp. 403-406. ISSN 1474-7596
Cetinić, Eva (2021) Towards generating and evaluating iconographic image captions of artworks. Journal of Imaging, 7 (8). ISSN 2313-433X
Cetinić, Eva; Lipić, Tomislav; Grgić, Sonja (2019) A Deep Learning Perspective on Beauty, Sentiment, and Remembrance of Art. IEEE Access, 7 . pp. 73694-73710. ISSN 2169-3536
Cetinić, Eva; Lipić, Tomislav; Grgić, Sonja (2018) Fine-tuning Convolutional Neural Networks for fine art classification. Expert Systems with Applications, 114 . pp. 107-118. ISSN 0957-4174
Daghighi, Amirreza; Casanola-Martin, Gerardo M.; Timmerman, Troy; Milenković, Dejan; Lučić, Bono; Rasulev, Bakhtiyor (2022) In Silico Prediction of the Toxicity of Nitroaromatic Compounds: Application of Ensemble Learning QSAR Approach. Toxics, 10 (12). ISSN 2305-6304
Davidović, Davor (2014) Solving Large Dense Symmetric Eigenproblem on Hybrid Architectures. Doctoral thesis, Sveučilište u Zagrebu, Fakultet elektrotehnike i računarstva.
Davidović, Davor Onboarding services to the EOSC Marketplace: An example of REVIGO service. In: PUBMET 2021 - Thw 8th conference on Scholarly communication in the context of open science (15 September 2021 - 17 September 2021) Zadar, Croatia.
Davidović, Davor; Cetinić, Eva; Skala, Karolj European research area and digital humanities. In: Perspektive digitalne humanistike u europskom znanstvenom oblaku (12 July 2017 - 12 July 2017) Zagreb, Hrvatska. (Unpublished)
Davidović, Davor; Cetinić, Eva; Skala, Karolj DARIAH Science Gateway - hands-on. In: Perspektive digitalne humanistike u europskom znanstvenom oblaku (12 July 2017 - 12 July 2017) Zagreb, Hrvatska. (Unpublished)
Davidović, Davor; Depolli, Matjaž; Lipić, Tomislav; Skala, Karolj; Trobec, Roman (2015) Energy efficiency of parallel multicore programs. Scalable Computing: Practice and Experience, 16 (4). pp. 437-448. ISSN 1895-1767
Davidović, Davor; Eva, Cetinić; Karolj, Skala Digital Arts and Humanities in the European Open Science Cloud. In: Second International Workshop on Data Science (30 November 2017 - 30 November 2017) Zagreb. (Unpublished)
Davidović, Davor; Karolj, Skala; Peter, Kacsuk; Philipp, Wieder (2018) EOSC servisi za digitalnu humanistiku. In: Bekić, Zoran; Golubić, Kruno; Kučina Softić, Sandra; Pavičić, Vlasta; Rako, Sabina, (eds.) Knjiga sažetaka : Dani e-infrastrukture Srce - DEI 2018. Zagreb, Sveučilište u Zagrebu, Sveučilišni računski centar, p. 39 .
Davidović, Davor; Lipić, Tomislav; Skala, Karolj (2013) AdriaScience gateway: application specific gateway for advanced meteorological predictions on Croatian distributed computing infrastructures. In: Biljanović, Petar; Skala, Karolj, (eds.) Proceedings of the 36th International Convention MIPRO. Rijeka, MIPRO, pp. 237-241 .
Davidović, Davor; Skala, Karolj (2010) Implementation of the WRF-ARW prognostic model on the Grid. In: Biljanović, Petar; Skala, Karolj, (eds.) Proceedings Vol. I. MEET&GVS 33rd International Convention on information and communication technology, elecronics and microelectronics. Rijeka, IEEE, pp. 253-258 .
Davidović, Davor; Wandl-Vogt, Eveline; Skala, Karolj; Kalman, Tibor EGI-Engage – Competence Centre for DARIAH-ERIC. In: 12th European Semantic Web Conference (ESWC2015) (31 May 2015 - 4 June 2015) Portorož, Slovenija. (Unpublished)
De Collibus, Francesco Maria; Partida, Alberto; Piškorec, Matija; Tessone, Claudio J. (2021) Heterogeneous Preferential Attachment in Key Ethereum-Based Cryptoassets. Frontiers in Physics, 9 . ISSN 2296-424X
Di Napoli, Edoardo; Genovesi, Luigi; Davidović, Davor Learning Materials at eXascale. In: iSC-HPC project posters. .
(EGI-Engage) Dorn, Amelie; Wandl-Vogt, Eveline; Davidović, Davor; Barbera, Roberto (2019) Opening up traditional cultural knowledge by means of European infrastructures: the examples of exploreAT! & EGI Engage. Revista de Humanidades Digitales, 3 . pp. 124-134. ISSN 2531-1786
Dunjko, Vedran; Friis, Nicolai; Briegel, Hans J. (2015) Quantum-enhanced deliberation of learning agents using trapped ions. New journal of physics, 17 (2). 023006-1-023006-17. ISSN 1367-2630
Fabregat-Traver, Diego; Davidović, Davor; Höhnerbach, Markus; Di Napoli, Edoardo (2017) Hybrid CPU-GPU generation of the Hamiltonian and overlap matrices in FLAPW methods. In: Di Napoli, E.; Hermanns, Marc-A.; Iliev, H.; Lintermann, A.; Peyser, A., (eds.) LNCS - High Performance Scientific Computing. pp. 200-211 .
Forer, Lukas; Afgan, Enis; Weissenteiner, Hansi; Davidović, Davor; Specht, Guenther; Kronenberg, Florian; Schoenherr, Sebastian (2016) CLOUDFLOW - Enabling Faster Biomedical Pipelines with Mapreduce and Spark. Scalable Computing: Practice and Experience, 17 (2). pp. 103-114. ISSN 1895-1767
Forer, Lukas; Afgan, Enis; Weißensteiner, Hansi; Davidović, Davor; Specht, Gűnter; Kronenberg, Florian; Schönherr, Sebastian (2015) Cloudflow – A Framework for MapReduce Pipeline Development in Biomedical Research. In: Biljanović, Petar, (ed.) MIPRO 2015 38th International Convention Proceedings. Rijeka, Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO, pp. 185-190 .
Forer, Lukas; Lipić, Tomislav; Schönherr, Sebastian; Weissensteiner, Hansi; Davidović, Davor; Kronenberg, Florian; Afgan, Enis (2014) Delivering Bioinformatics MapReduce Applications in the Cloud. In: Biljanović, Petar, (ed.) MIPRO 2014 37th International Convention Proceedings. pp. 388-392 .
Fosin, Juraj; Davidović, Davor; Carić, Tonči (2013) A GPU implementation of local search operators for symmetric travelling salesman problem. Promet - Traffic & Transportation, 25 (3). pp. 225-234. ISSN 0353-5320
Futo, Momir; Opašić, Luka; Koska, Sara; Čorak, Nina; Široki, Tin; Ravikumar, Vaishnavi; Thorsell, Annika; Lenuzzi, Maša; Kifer, Domagoj; Domazet-Lošo, Mirjana; Vlahoviček, Kristian; Mijakovic, Ivan; Domazet-Lošo, Tomislav (2020) Embryo-like features in developing Bacillus subtilis biofilms. Molecular biology and evolution, 38 (1). pp. 31-47. ISSN 0737-4038
Futo, Momir; Široki, Tin; Koska, Sara; Čorak, Nina; Tušar, Anja; Domazet-Lošo, Mirjana; Domazet-Lošo, Tomislav (2022) A novel time-lapse imaging method for studying developing bacterial biofilms. Scientific Reports, 12 . ISSN 2045-2322
Gamberger, Dragan; Zenko, Bernard; Mitelpunkt, Alexis; Shachar, Netta; Lavrac, Nada (2016) Clusters of male and female Alzheimer's disease patients in the Alzheimer's Disease Neuroimaging Initiative (ADNI) database. Brain Informatics, 3 (3). pp. 169-179. ISSN 2198-4018
Gamberger, Dragan; Ženko, Bernard; Mitelpunkt, Alexis; Lavrač, Nada (2015) Multilayer clustering: Biomarker driven segmentation of Alzheimer's disease patient population. In: Ortuno, Francisco; Rojas, Ignacio, (eds.) Bioinformatics and Biomedical Engineering. Heidelberg, Springer, pp. 134-145 .
Grubišić, Ivan; Davidović, Davor; Medved Rogina, Branka; Depolli, Matjaž; Mohorčič, Miha; Trobec, Roman (2019) Enriching Heart Monitoring with Accelerometer Data. In: MIPRO, Proceedings of the International Convention. https://ieeexplore.ieee.org/abstract/document/8756870, IEEE Xplore, pp. 309-313 .
Grubišić, Ivan; Gjenero, Luka; Lipić, Tomislav; Sović, Ivan; Skala, Tibor (2011) Medical 3D thermography system. Periodicum Biologorum, 113 (4). pp. 401-406. ISSN 0031-5362
Hršak, Dalibor; Katanić, Ivan; Ristov, Strahil (2022) A fast method for the selection of samples in populations with available genealogical data. Diversity, 14 (2). ISSN 1424-2818
Jakobović, Domagoj; Đurasević, Marko; Brkić, Karla; Fosin, Juraj; Carić, Tonči; Davidović, Davor (2023) Evolving Dispatching Rules for Dynamic Vehicle Routing with Genetic Programming. Algorithms, 16 (6). ISSN 1999-4893
Jukić, Ante Ekstrakcija značajki iz 1D podataka korištenjem dekompozicije tenzora. In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
Jukić, Ante; Filipović, Marko (2013) Supervised feature extraction for tensor objects based on maximization of mutual information. Pattern Recognition Letters, 34 (13). pp. 1476-1484. ISSN 0167-8655
Jukić, Ante; Kopriva, Ivica; Cichocki, Andrzej (2013) Noninvasive diagnosis of melanoma with tensor decomposition-based feature extraction from clinical color image. Biomedical Signal Processing and Control, 8 (6). pp. 755-763. ISSN 1746-8094
Katanić, Ivan; Ristov, Strahil; Rosenzweig, Martin (2020) A Fast Algorithm for the Largest Area First Parsing of Real Strings. IEEE access, 8 . pp. 141990-142002. ISSN 2169-3536
Kolarek, Branimir; Gamulin, Ljub; Davidović, Davor (2024) Cultural Heritage on HPC - Creating High Resolution 3D Models Using Photogrammetry. In: 2024 47th MIPRO ICT and Electronics Convention (MIPRO). pp. 1121-1127 .
Kopriva, Ivica; Filipović, Marko (2011) A mixture model with a reference-based automatic selection of components for disease classification from protein and/or gene expression levels. BMC Bioinformatics, 12 . 496-1-496-17. ISSN 1471-2105
Kopriva, Ivica; Jerić, Ivanka (2014) Blind Separation of Analytes in Nuclear Magnetic Resonance Spectroscopy: Improved Model for Nonnegative Matrix Factorization. Chemometrics and Intelligent Laboratory Systems, 137 . pp. 47-56. ISSN 0169-7439
Kopriva, Ivica; Jerić, Ivanka; Brkljačić, Lidija (2013) Nonlinear mixture-wise expansion approach to underdetermined blind separation of nonnegative dependent sources. Journal of Chemometrics, 27 (7/8). pp. 189-197. ISSN 0886-9383
Kopriva, Ivica; Jerić, Ivanka; Brkljačić, Lidija (2015) Explicit–implicit mapping approach to nonlinear blind separation of sparse nonnegative dependent sources from a single mixture: pure component extraction from nonlinear mixture mass spectra. Journal of chemometrics, 29 (11). pp. 615-626. ISSN 0886-9383
Kopriva, Ivica; Jerić, Ivanka; Filipović, Marko; Brkljačić, Lidija (2014) Empirical kernel map approach to nonlinear underdetermined blind separation of sparse nonnegative dependent sources: pure component extraction from nonlinear mixture mass spectra. Journal of Chemometrics, 28 (9). pp. 704-715. ISSN 0886-9383
Kopriva, Ivica; Ju, Wei; Zhang, Bin; Shi, Fei; Xiang, Dehui; Yu, Kai; Wang, Ximing; Bagci, Ulas; Chen, Xinjian (2017) Single-channel sparse non-negative blind source separation method for automatic 3-D delineation of lung tumor in PET images. IEEE Journal of Biomedical and Health Informatics, 21 (6). pp. 1656-1666. ISSN 2168-2194
Kopriva, Ivica; Popović Hadžija, Marijana; Hadžija, Mirko; Aralica, Gorana (2015) Offset-sparsity decomposition for automated enhancement of color microscopic image of stained specimen in histopathology. Journal of Biomedical Optics, 20 (7). 076012-1. ISSN 1083-3668
Levatić, Jurica; Pavić, Kristina; Perković, Ivana; Uzelac, Lidija; Ester, Katja; Kralj, Marijeta; Kaiser, Marcel; Rottmann, Matthias; Supek, Fran; Zorc, Branka (2018) Machine learning prioritizes synthesis of primaquine ureidoamides with high antimalarial activity and attenuated cytotoxicity. European Journal of Medicinal Chemistry, 146 . pp. 651-667. ISSN 0223-5234
Lovrić, Jakov (2022) Structural properties of Quantizer problem solutions. Doctoral thesis, Friedrich-Alexander-Universität Erlangen-Nürnberg.
Lovrić, Mario; Pavlović, Kristina; Žuvela, Petar; Spataru, Adrian; Lučić, Bono; Kern, Roman; Wong, Ming Wah (2021) Machine learning in prediction of intrinsic aqueous solubility of drug‐like compounds: Generalization, complexity, or predictive ability?. Journal of chemometrics, 35 (7-8). ISSN 0886-9383
Marić, Ivan (2017) Retrieving sinusoids from nonuniformly sampled data using recursive relations. Expert Systems with Applications, 72 . pp. 245-257. ISSN 0957-4174
Maričević, Josip; Skala, Karolj; Šojat, Zorislav; Mesarić, Josip; Jerković, Igor; Bojović, Viktor; Hofman, Daniel (2022) HashNET Blockchain Consensus for DLT Applications. Current journal of applied science and technology, 41 (4). ISSN 2457-1024
Markus, Andras; Biro, Mate; Skala, Karolj; Šojat, Zorislav; Kertesz, Attila (2022) Modeling Dew Computing in DISSECT-CF-Fog. Applied Sciences, 12 (17). ISSN 2076-3417
Mekterović, Igor; Mekterović, Darko; Maglica, Željka (2014) BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies. BMC Bioinformatics, 15 (251). pp. 1-10. ISSN 1471-2105
Mihelčić, Matej; Džeroski, Sašo; Lavrač, Nada; Šmuc, Tomislav (2017) A framework for redescription set construction. Expert Systems with Applications, 68 . pp. 196-215. ISSN 0957-4174
Mihelčić, Matej; Šmuc, Tomislav (2021) Approaches for Multi-View Redescription Mining. IEEE access, 9 . pp. 19356-19378. ISSN 2169-3536
Mijić, Nenad; Davidović, Davor (2022) Batched matrix operations on distributed GPUs with application in theoretical physics. In: 2022 45th Jubiilee International Convention on Information, Communication and Electronic Technology (MIPRO). pp. 293-299 .
Mijić, Nenad; Davidović, Davor (2023) Benchmark DPC++ code and performance portability on heterogeneous architectures. In: Skala, Karolj, (ed.) 2023 46th ICT and Electronics Convention (MIPRO). pp. 331-337 .
Muñoz-Torres, Pau M.; Rokić, Filip; Belužić, Robert; Grbeša, Ivana; Vugrek, Oliver (2016) msBiodat analysis tool, big data analysis for high-throughput experiments. BioData Mining, 9 (26). ISSN 1756-0381
Paparo, Giuseppe Davide; Dunjko, Vedran; Makmal, Adi; Martin- Delgado, Miguel Angel; Briegel, Hans J. (2014) Quantum speedup for active learning agents. Physical Review X, 4 . 031002/1-031002/14. ISSN 2160-3308
Piškorec, Matija (2019) Statistical Inference of Exogenous and Endogenous Information Propagation in Social Networks. Doctoral thesis, Rudjer Boskovic Institute.
Piškorec, Matija; Šmuc, Tomislav; Šikić, Mile (2019) Disentangling Sources of Influence in Online Social Networks. IEEE Access, 7 . pp. 131692-131704. ISSN 2169-3536
Podobnik, Boris; Horvatić, Davor; Lipić, Tomislav; Perc, Matjaž; Buldú, Javier Martin; Stanley, H. Eugene (2015) The cost of attack in competing networks. Journal of the Royal Society Interface, 12 (112). pp. 20150770-1. ISSN 1742-5689
Podobnik, Boris; Lipić, Tomislav; Horvatić, Davor; Majdandžić, Antonio; Bishop, Steven R.; Stanley, H. Eugene (2015) Predicting the Lifetime of Dynamic Networks Experiencing Persistent Random Attacks. Scientific Reports, 5 (14286). 14286/1-14286/15. ISSN 2045-2322
Ray, Partha Pratim; Skala, Karolj (2022) Internet of Things Aware Secure Dew Computing Architecture for Distributed Hotspot Network: A Conceptual Study. Applied Sciences, 12 (18). ISSN 2076-3417
Ristov, Strahil; Brajković, Vladimir; Cubric Curik, Vlatka; Michieli, Ivan; Curik, Ino (2016) MaGelLAn 1.0 : a software to facilitate quantitative and population genetic analysis of maternal inheritance by combination of molecular and pedigree information. Genetics Selection Evolution, 48 . 65-1-65-10. ISSN 0999-193X
(Indigo DataCloud) Salomoni, D.; Campos, I.; Gaido, L.; de Lucas, J. Marco; Solagna, P.; Gomes, J.; Matyska, L.; Fuhrman, P.; Hardt, M.; Donvito, G.; Dutka, L.; Plociennik, M.; Barbera, R.; Blanquer, I.; Ceccanti, A.; Cetinić, Eva; David, M.; Duma, C.; López-García, A.; Moltó, G.; Orviz, P.; Sustr, Z.; Viljoen, M.; Aguilar, F.; Alves, L.; Antonacci, M.; Antonelli, L. A.; Bagnasco, S.; Bonvin, A. M. J. J.; Bruno, R.; Chen, Y.; Costa, A.; Davidović, Davor; Ertl, B.; Fargetta, M.; Fiore, S.; Gallozzi, S.; Kurkcuoglu, Z.; Lloret, L.; Martins, J.; Nuzzo, A.; Nassisi, P.; Palazzo, C.; Pina, J.; Sciacca, E.; Spiga, D.; Tangaro, M.; Urbaniak, M.; Vallero, S.; Wegh, B.; Zaccolo, V.; Zambelli, F.; Zok, T. (2018) INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures. Journal of Grid Computing, 16 (3). pp. 381-408. ISSN 1570-7873
Savić, Aleksandar; Živković, Suzana; Jovanović, Katarina; Dupochel, Ludovic; Kopriva, Ivica (2015) Complete determination of plant tissues based only on auto-fluorescence and the advanced image analysis – study of needles and stamens. Journal of chemometrics, 29 (10). pp. 521-527. ISSN 0886-9383
Schönherr, Sebastian; Forer, Lukas; Davidović, Davor; Weissensteiner, Hansi; Kronenberg, Florian; Afgan, Enis Bringing Hadoop into Bioinformatics with Cloudgene and CloudMan. In: 16th Annual Bioinformatics Open Source Conference, BOSC 2015 (10 July 2015 - 11 July 2015) Dublin, Ireland. (Unpublished)
Sitnik, Dario; Aralica, Gorana; Hadžija, Mirko; Popović Hadžija, Marijana; Pačić, Arijana; Milković Periša, Marija; Manojlović, Luka; Krstanac, Karolina; Plavetić, Andrija; Kopriva, Ivica (2020) A Dataset and a Methodology for Intraoperative Computer-Aided Diagnosis of a Metastatic Colon Cancer in a Liver. Biomedical Signal Processing and Control, 66 (4). pp. 1-11. ISSN 1746-8094
Skala, Karolj; Davidović, Davor Parallel and scalable algorithms on heterogeneous computing architectures. In: First international workshop on Data Science (IWDS 2016) (30 November 2016 - 30 November 2016) .
Skala, Karolj; Davidović, Davor; Afgan, Enis; Sović, Ivan; Šojat, Zorislav (2015) Scalable distributed computing hierarchy: cloud, fog and dew computing. Open Journal of Cloud Computing (OJCC), 2 (1). pp. 16-24. ISSN 2199-1987
Skala, Karolj; Lipić, Tomislav; Sović, Ivan; Gjenero, Luko; Grubišić, Ivan (2011) 4D Thermal Imaging System for Medical Applications. Periodicum Biologorum, 113 (4). pp. 407-416. ISSN 0031-5362
Skala Kavanagh, Hana; Dubravić, Amir; Grazio, Simeon; Lipić, Tomislav; Sović, Ivan (2011) Computer supported thermography monitoring of hand strength evaluation by electronic dynamometer. Periodicum Biologorum, 113 (4). pp. 433-437. ISSN 0031-5362
Sluban, Borut; Gamberger, Dragan; Lavrač, Nada (2014) Ensemble-based noise detection: noise ranking and visual performance evaluation. Data mining and knowledge discovery, 28 (2). pp. 265-303. ISSN 1384-5810
Sović, Ivan (2016) Algorithms for de novo genome assembly from third generation sequencing data. Doctoral thesis, Sveučilište u Zagrebu, Fakultet elektrotehnike i računarstva.
Sović, Ivan; Križanović, Krešimir; Skala, Karolj; Šikić, Mile (2016) Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads. Bioinformatics, 32 (17). pp. 2582-2589. ISSN 1367-4803
Sović, Ivan; Lipić, Tomislav; Gjenero, Luko; Grubišić, Ivan; Skala, Karolj (2011) Experimental verification of heat source parameter stimation from 3D thermograms. Periodicum biologorum, 113 (4). pp. 417-423. ISSN 0031-5362
Sović, Ivan; Lipić, Tomislav; Grubišić, Ivan; Gjenero, Luko 3D termografija i medicinske primjene. In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
Sović, Ivan; Šikić, Mile; Wilm, Andreas; Fenlon, Shannon Nicole; Chen, Swaine (2016) Fast and sensitive mapping of nanopore sequencing reads with GraphMap. Nature Communications, 7 . pp. 11307-1. ISSN 2041-1723
Supek, Fran; Bošnjak, Matko; Škunca, Nives; Šmuc, Tomislav (2011) REVIGO summarizes and visualizes long lists of Gene Ontology terms. PLoS ONE, 6 (7). e21800/1-e21800/9. ISSN 1932-6203
Tolić, Dijana; Antunov-Fantulin, Nino; Kopriva, Ivica (2018) A Nonlinear Orthogonal Non-Negative Matrix Factorization Approach to Subspace Clustering. Pattern Recognition, 82 (10). pp. 40-55. ISSN 0031-3203
Vaser, Robert; Sović, Ivan; Nagarajan, Niranjan; Šikić, Mile (2017) Fast and accurate de novo genome assembly from long uncorrected reads. Genome Research, - (-). ---. ISSN 1088-9051
Vidulin, Vedrana; Šmuc, Tomislav; Džeroski, Sašo; Supek, Fran (2018) The evolutionary signal in metagenome phyletic profiles predicts many gene functions. Microbiome, 6 . ISSN 2049-2618
Wallden, Petros; Dunjko, Vedran; Kent, Adrian; Andersson, Erika (2015) Quantum digital signatures with quantum-key-distribution components. Physical Review A, 91 (4). 042304/1-042304/10. ISSN 1050-2947
Šikić, Mile; Tomić, Sanja; Vlahoviček, Kristian (2009) Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests. Plos computational biology, 5 (1). e1000278-1. ISSN 1553-734X
Škoda, Peter (2014) Heterogeneous computing system with field programmable gate array coprocessor for decision tree learning. Doctoral thesis, Sveučilište u Zagrebu, Fakultet elektrotehnike i računarstva.
