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Armitage, Sophie A.O.; Milutinović, Barbar (2022) Editorial overview: Evolutionary ecology of insect immunity. Current Opinion in Insect Science, 53 . ISSN 2214-5745
Beljan, Silvestar; Herak Bosnar, Maja; Ćetković, Helena (2020) Rho Family of Ras-Like GTPases in Early-Branching Animals. Cells, 9 (10). ISSN 2073-4409
Brajković, Josip; Feliciello, Isidoro; Bruvo Mađarić, Branka; Ugarković, Đurđica (2012) Satellite DNA-Like Elements Associated With Genes Within Euchromatin of the Beetle Tribolium castaneum. G3, 2 (8). pp. 931-941. ISSN 2160-1836
Buljubašić, Maja; Repar, Jelena; Šimatović, Ana; Vlašić, Ignacija Što Prva dama molekularne biologije i Conan imaju zajedničko? Bakterijski mehanizmi popravka oštećene molekule DNA. In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
Böszörményi, Kinga P.; Podgorski, Iva I.; Vidovszky, Márton Z.; Sós, Endre; Benkő, Mária; Harrach, Balázs (2020) Full genome sequence analysis of a novel adenovirus from a captive polar bear (Ursus maritimus). Virus Research, 277 . ISSN 0168-1702
Chaux, Frederic; Agier, Nicolas; Garrido, Clotilde; Fischer, Gilles; Eberhard, Stephan; Xu, Zhou (2023) Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii. Genome Research, 33 (9). pp. 1582-1598. ISSN 1549-5469
Davidović, Davor Onboarding services to the EOSC Marketplace: An example of REVIGO service. In: PUBMET 2021 - Thw 8th conference on Scholarly communication in the context of open science (15 September 2021 - 17 September 2021) Zadar, Croatia.
Despot-Slade, Evelin (2022) Characterization and evolution of centromere in nematodes of the genus Meloidogyne. Doctoral thesis, Sveučilište Josipa Jurja Strossmayera u Osijeku, Sveučilište u Dubrovniku, Institut Ruđer Bošković, Sveučilište Josipa Jurja Strossmayera u Osijeku, Sveučilište u Dubrovniku, Institut Ruđer Bošković.
Dragojević, Jelena; Mihaljević, Ivan; Popović, Marta; Žaja, Roko; Smital, Tvrtko (2017) In vitro characterization of zebrafish (Danio rerio) organic anion transporters Oat2a-e. Toxicology in Vitro, 46 . pp. 246-256. ISSN 0887-2333
Feliciello, Isidoro; Zahradka, Davor; Zahradka, Ksenija; Ivanković, Siniša; Puc, Nikolina; Đermić, Damir (2018) RecF, UvrD, RecX and RecN proteins suppress DNA degradation at DNA double-strand breaks in Escherichia coli. Biochimie, 148 . pp. 116-126. ISSN 0300-9084
Feliciello, Isidoro; Đermić, Edyta; Malović, Helena; Ivanković, Siniša; Zahradka, Davor; Ljubić, Sven; Procino, Alfredo; Đermić, Damir (2022) Regulation of ssb Gene Expression in Escherichia coli. International journal of molecular sciences, 23 (18). ISSN 1422-0067
Forer, Lukas; Afgan, Enis; Weißensteiner, Hansi; Davidović, Davor; Specht, Gűnter; Kronenberg, Florian; Schönherr, Sebastian (2015) Cloudflow – A Framework for MapReduce Pipeline Development in Biomedical Research. In: Biljanović, Petar, (ed.) MIPRO 2015 38th International Convention Proceedings. Rijeka, Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO, pp. 185-190 .
Glišić, Branka; Mihaljević, Ivan; Popović, Marta; Žaja, Roko; Lončar, Jovica; Fent, Karl; Kovačević, Radmila; Smital, Tvrtko (2015) Characterization of Glutathione-S-transferases in zebrafish (Danio rerio). Aquatic Toxicology, 158 . pp. 50-62. ISSN 0166-445X
Grdseloff, Nastasja; Boulday, Gwenola; Rödel, Claudia J.; Otten, Cécile; Vannier, Daphné Raphaelle; Cardoso, Cécile; Faurobert, Eva; Dogra, Deepika; Tournier-Lasserve, Elisabeth; Abdelilah-Seyfried, Salim (2023) Impaired retinoic acid signaling in cerebral cavernous malformations. Scientific Reports, 13 (1). ISSN 2045-2322
Imešek, Mirna; Pleše, Bruna Spužve roda Clathrina (Calcarea) iz sjevernog Jadrana. In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
Ivanković, Siniša; Vujaklija, Dušica; Đermić, Damir (2017) Nucleolytic degradation of 3′-ending overhangs is essential for DNA-end resection in RecA-loading deficient recB mutants of Escherichia coli. DNA repair, 57 . pp. 56-65. ISSN 1568-7864
Jovović, Lada; Bedek, Jana; Malard, Florian; Bilandžija, Helena (2024) De novo transcriptomes of cave and surface isopod crustaceans: insights from 11 species across three suborders. Scientific Data, 11 (1). ISSN 2052-4463
Koska, Sara (2022) Phylogeny-ontogeny correspondence in Bacillus subtilis biofilms. Doctoral thesis, Faculty of Science.
Kriško, Anita; Copić, Tea; Gabaldon, Toni; Lehner, Ben; Supek, Fran (2014) Inferring gene function from evolutionary change in signatures of translation efficiency. Genome Biology, 15 (3). R44-1. ISSN 1465-6906
Lončar, Jovica; Popović, Marta; Krznar, Petra; Žaja, Roko; Smital, Tvrtko (2016) The first characterization of multidrug and toxin extrusion (MATE/SLC47) proteins in zebrafish (Danio rerio). Scientific Reports, 6 . ISSN 2045-2322
Mihaljević, Ivan; Popović, Marta; Žaja, Roko; Smital, Tvrtko (2016) Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio). BMC Genomics, 17 . pp. 626-1. ISSN 1471-2164
Mikolčević, Petra; Hloušek-Kasun, Andrea; Rack, Matthias; Tromans-Coia, Callum; Schuller, Marion; Jankevicious, Gytis; Matković, Marija; Bertoša, Branimir; Ahel, Ivan; Mikoč, Andreja (2022) Streptomyces coelicolor macrodomain hydrolase SCO6735 cleaves thymidine-linked ADP-ribosylation of DNA. Computational and Structural Biotechnology Journal, 20 . pp. 4337-4350. ISSN 2001-0370
Nerlović, Vedrana; Korlević, Marino; Mravinac, Brankica (2016) Morphological and molecular differences between the invasive bivalve Ruditapes philippinarum (Adams & Reeve, 1850) and the native species Ruditapes decussatus (Linnaeus, 1758) from the northeastern Adriatic Sea. Journal of Shellfish Research, 35 (1). pp. 1-9. ISSN 0730-8000
Paar, Vladimir; Glunčić, Matko; Basar, Ivan; Rosandić, Marija; Paar, Petar; Cvitković, Mislav (2011) Large tandem, higher order repeats and regularly dispersed repeat units contribute substantially to divergence between human and chimpanzee Y chromosomes. Journal of Molecular Evolution, 72 (1). pp. 34-55. ISSN 0022-2844
Pantó, Laura; Podgorski, Iva I.; Jánoska, Máté; Márkó, Orsolya; Harrach, Balázs (2015) Taxonomy proposal for Old World monkey adenoviruses: characterisation of several non-human, non-ape primate adenovirus lineages. Archives of Virology, 160 (12). pp. 3165-3177. ISSN 0304-8608
Pavlek, Martina; Šatović, Eva; Pezer, Željka Kopanje po genomskom "smeću" (Uloga nekodirajućeg dijela genoma). In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
Platania, Leonardo; Pavlek, Martina; Arnedo, Miquel (2020) Testing the monophyly of the ground-dweller spider genus Harpactea Bristowe, 1939 (Araneae, Dysderidae) with the description of three new species. Systematics and biodiversity, 18 (7). pp. 688-707. ISSN 1477-2000
Platania, Leonardo; Pavlek, Martina; Arnedo, Miquel (2020) Testing the monophyly of the ground-dweller spider genus Harpactea Bristowe, 1939 (Araneae, Dysderidae) with the description of three new species. Systematics and biodiversity, 18 (7). pp. 688-707. ISSN 1477-2000
Podgorski, Iva I.; Pantó, Laura; Földes, Katalin; de Winter, Iris; Jánoska, Máté; Sós, Endre; Chenet, Baptiste; Harrach, Balázs; Benkő, Mária (2018) Adenoviruses of the most ancient primate lineages support the theory on virus−host co-evolution. Acta Veterinaria Hungarica, 66 (3). pp. 474-487. ISSN 0236-6290
Podgorski, Iva I.; Pantó, Laura; Papp, Tibor; Harrach, Balázs; Benkö, Mária (2016) Genome analysis of four Old World monkey adenoviruses supports the proposed species classification of primate adenoviruses and reveals signs of possible homologous recombination. Journal of General Virology, 97 (7). pp. 1604-1614. ISSN 0022-1317
Popović, Marta (2022) TEX264 at the intersection of autophagy and DNA repair. Autophagy, 18 (1). pp. 40-49. ISSN 1554-8627
Popović, Marta; Žaja, Roko; Smital, Tvrtko (2010) Organic anion transporting polypeptides (OATP) in zebrafish (Danio rerio): phylogenetic analysis and tissue distribution. Comparative Biochemistry and Physiology - A: Comparative Physiology, 155 (3). pp. 327-335. ISSN 0300-9629
Stojanović, Nikolina; Vuković, Lidija Mehanizmi otpornosti: kad tumor uzvrati udarac. In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
(ERGA (The European Reference Genome Atlas)) Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R.; Godoy, José A.; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah A.; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Secomandi, Simona; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jan; Waldvogel, Ann-Marie; Zhang, Guojie; Jarvis, Erich D.; Bálint, Miklós; Ciofi, Claudio; Waterhouse, Robert M.; Mazzoni, Camila J.; Höglund, Jacob; Aghayan, Sargis A.; Alioto, Tyler S.; Almudi, Isabel; Alvarez, Nadir; Alves, Paulo C.; Amorim do Rosario, Isabel R.; Antunes, Agostinho; Arribas, Paula; Baldrian, Petr; Bertorelle, Giorgio; Böhne, Astrid; Bonisoli-Alquati, Andrea; Boštjančić, Ljudevit L.; Boussau, Bastien; Breton, Catherine M.; Buzan, Elena; Campos, Paula F.; Carreras, Carlos; Castro, L. FIlipe C.; Chueca, Luis J.; Čiampor, Fedor; Conti, Elena; Cook-Deegan, Robert; Croll, Daniel; Cunha, Mónica V.; Delsuc, Frédéric; Dennis, Alice B.; Dimitrov, Dimitar; Faria, Rui; Favre, Adrien; Fedrigo, Olivier D.; Fernández, Rosa; Ficetola, Gentile Francesco; Flot, Jean-François; Gabaldón, Toni; Agius, Dolores R.; Giani, Alice M.; Gilbert, M. Thomas P.; Grebenc, Tine; Guschanski, Katerina; Guyot, Romain; Hausdorf, Bernhard; Hawlitschek, Oliver; Heintzman, Peter D.; Heinze, Berthold; Hiller, Michael; Husemann, Martin; Iannucci, Alessio; Irisarri, Iker; Jakobsen, Kjetill S.; Klinga, Peter; Kloch, Agnieszka; Kratochwil, Claudius F.; Kusche, Henrik; Layton, Kara K.S.; Leonard, Jennifer A.; Lerat, Emmanuelle; Liti, Gianni; Manousaki, Tereza; Marques-Bonet, Tomas; Matos-Maraví, Pável; Matschiner, Michael; Maumus, Florian; Mc Cartney, Ann M.; Meiri, Shai; Melo-Ferreira, José; Mengual, Ximo; Monaghan, Michael T.; Montagna, Matteo; Mysłajek, Robert W.; Neiber, Marco T.; Nicolas, Violaine; Novo, Marta; Ozretić, Petar; Palero, Ferran; Pârvulescu, Lucian; Pascual, Marta; Paulo, Octávio S.; Pavlek, Martina; Pegueroles, Cinta; Pellissier, Loïc; Pesole, Graziano; Primmer, Craig R.; Riesgo, Ana; Rüber, Lukas; Rubolini, Diego; Salvi, Daniele; Seehausen, Ole; Seidel, Matthias; Studer, Bruno; Theodoridis, Spyros; Thines, Marco; Urban, Lara; Vasemägi, Anti; Vella, Adriana; Vella, Noel; Vernes, Sonja C.; Vernesi, Cristiano; Vieites, David R.; Wheat, Christopher W.; Wörheide, Gert; Wurm, Yannick; Zammit, Gabrielle (2023) How genomics can help biodiversity conservation. Trends in Genetics, 39 (7). pp. 545-559. ISSN 0168-9525
Van Vooren, Nicolas; Lindemann, Uwe; Vega, Marcel; Ribes, Miguel Ángel; Illescas, Tomás; Matočec, Neven; Kušan, Ivana (2015) Lachnea poiraultii (Pezizales), rediscovered after more than one hundred years. Ascomycete.org : revue internationale pour la taxinomie des Ascomycota, 7 (3). pp. 105-116. ISSN 2102-4995
Vidulin, Vedrana; Šmuc, Tomislav; Supek, Fran (2016) Extensive complementarity between gene function prediction methods. Bioinformatics, 32 (23). pp. 3645-3653. ISSN 1367-4803
Vojvoda Zeljko, Tanja; Kajan, Katarina; Jalžić, Branko; Hu, Anyi; Cukrov, Neven; Marguš, Marija; Cukrov, Nuša; Marković, Tamara; Sabatino, Raffaella; Di Cesare, Andrea; Orlić, Sandi (2024) Genome-centric metagenomes unveiling the hidden resistome in an anchialine cave. Environmental Microbiome, 19 (1). ISSN 2524-6372
Zeng, Ming; Gentekaki, Eleni; Hyde, Kevin D.; Zhao, Qi; Matočec, Neven; Kušan, Ivana (2023) Phylogeny and Morphology of Novel Species and New Collections Related to Sarcoscyphaceae (Pezizales, Ascomycota) from Southwestern China and Thailand. Biology, 12 (1). ISSN 2079-7737
Ćukušić Kalajžić, Andrea; Ferenac Kiš, M.; Ivanković, M.; Škrobot Vidaček, Nikolina; Ruvelj, Ivica Telomere – molekularni mehanizmi starenja. In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)
Čupić, Mateo; Marčić, Zoran; Lukić, Marko; Gračan, Romana; Bilandžija, Helena (2023) The first cavefish in the Dinaric Karst? Cave colonization made possible by phenotypic plasticity in Telestes karsticus. Zoological Research, 44 (4). pp. 821-833. ISSN 2095-8137
Đermić, Damir (2015) Double-strand break repair mechanisms in Escherichia coli: Recent insights. Advances in Genomics and Genetics, 5 . pp. 35-42. ISSN 1179-9870
Đermić, Edyta; Zahradka, Davor; Vujaklija, Dušica; Ivanković, Siniša; Đermić, Damir (2017) 3'-terminated Overhangs Regulate DNA Double-Strand Break Processing in Escherichia coli. G3-Genes Genomes Genetics, 7 (9). pp. 3091-3102. ISSN 2160-1836
Šamec, Dunja; Bogović, Mara; Vincek, Dragutin; Martinčić, Jelena; Salopek Sondi, Branka (2014) Assessing the authenticity of the white cabbage (Brassica oleracea var. capitata f. alba) cv. ‘Varaždinski’ by molecular and phytochemical markers. Food Research International, 60 . pp. 266-272. ISSN 0963-9969
Šatović, Eva (2013) Organizacija ponovljenih sekvenci DNA u genomima tri vrste školjkaša. Doctoral thesis, Sveučilište Josipa Jurja Strossmayera u Osijeku, Sveučilišni poslijediplomski interdisciplinarni doktorski studij Molekularne bioznanosti.
Šatović, Eva; Luchetti, Andrea; Pasantes, Juan; García-Souto, Daniel; Cedilak, Andrea; Plohl, Miroslav (2019) Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves. Scientific reports, 9 . ISSN 2045-2322
Šatović, Eva; Plohl, Miroslav (2013) Tandem repeat-containing MITEs in the clam Donax trunculus. Genome Biology and Evolution, 5 (12). pp. 2549-2559. ISSN 1759-6653
Šestak, Martin Sebastijan; Domazet-Lošo, Tomislav (2015) Phylostratigraphic Profiles in Zebrafish Uncover Chordate Origins of the Vertebrate Brain. Molecular Biology and Evolution, 32 (2). pp. 299-312. ISSN 0737-4038
Žaja, Roko; Popović, Marta; Lončar, Jovica; Smital, Tvrtko (2016) Functional characterization of rainbow trout (Oncorhynchus mykiss) Abcg2a (Bcrp) transporter. Comparative Biochemistry and Physiology - Part C: Comparative Pharmacology, 190 . pp. 15-23. ISSN 0306-4492
