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(ERGA (The European Reference Genome Atlas)) Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R.; Godoy, José A.; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah A.; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Secomandi, Simona; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jan; Waldvogel, Ann-Marie; Zhang, Guojie; Jarvis, Erich D.; Bálint, Miklós; Ciofi, Claudio; Waterhouse, Robert M.; Mazzoni, Camila J.; Höglund, Jacob; Aghayan, Sargis A.; Alioto, Tyler S.; Almudi, Isabel; Alvarez, Nadir; Alves, Paulo C.; Amorim do Rosario, Isabel R.; Antunes, Agostinho; Arribas, Paula; Baldrian, Petr; Bertorelle, Giorgio; Böhne, Astrid; Bonisoli-Alquati, Andrea; Boštjančić, Ljudevit L.; Boussau, Bastien; Breton, Catherine M.; Buzan, Elena; Campos, Paula F.; Carreras, Carlos; Castro, L. FIlipe C.; Chueca, Luis J.; Čiampor, Fedor; Conti, Elena; Cook-Deegan, Robert; Croll, Daniel; Cunha, Mónica V.; Delsuc, Frédéric; Dennis, Alice B.; Dimitrov, Dimitar; Faria, Rui; Favre, Adrien; Fedrigo, Olivier D.; Fernández, Rosa; Ficetola, Gentile Francesco; Flot, Jean-François; Gabaldón, Toni; Agius, Dolores R.; Giani, Alice M.; Gilbert, M. Thomas P.; Grebenc, Tine; Guschanski, Katerina; Guyot, Romain; Hausdorf, Bernhard; Hawlitschek, Oliver; Heintzman, Peter D.; Heinze, Berthold; Hiller, Michael; Husemann, Martin; Iannucci, Alessio; Irisarri, Iker; Jakobsen, Kjetill S.; Klinga, Peter; Kloch, Agnieszka; Kratochwil, Claudius F.; Kusche, Henrik; Layton, Kara K.S.; Leonard, Jennifer A.; Lerat, Emmanuelle; Liti, Gianni; Manousaki, Tereza; Marques-Bonet, Tomas; Matos-Maraví, Pável; Matschiner, Michael; Maumus, Florian; Mc Cartney, Ann M.; Meiri, Shai; Melo-Ferreira, José; Mengual, Ximo; Monaghan, Michael T.; Montagna, Matteo; Mysłajek, Robert W.; Neiber, Marco T.; Nicolas, Violaine; Novo, Marta; Ozretić, Petar; Palero, Ferran; Pârvulescu, Lucian; Pascual, Marta; Paulo, Octávio S.; Pavlek, Martina; Pegueroles, Cinta; Pellissier, Loïc; Pesole, Graziano; Primmer, Craig R.; Riesgo, Ana; Rüber, Lukas; Rubolini, Diego; Salvi, Daniele; Seehausen, Ole; Seidel, Matthias; Studer, Bruno; Theodoridis, Spyros; Thines, Marco; Urban, Lara; Vasemägi, Anti; Vella, Adriana; Vella, Noel; Vernes, Sonja C.; Vernesi, Cristiano; Vieites, David R.; Wheat, Christopher W.; Wörheide, Gert; Wurm, Yannick; Zammit, Gabrielle (2023) How genomics can help biodiversity conservation. Trends in Genetics, 39 (7). pp. 545-559. ISSN 0168-9525

Ramírez, Martín J.; Wolff, Jonas O.; Jäger, Peter; Pavlek, Martina; Pérez‐González, Abel; Magalhaes, Ivan; Michalik, Peter (2023) Geometric regularity in webs of non‐orb‐weaving spiders. Ecology and Evolution, 13 (3). ISSN 2045-7758

Lukić, Marko; Fišer, Cene; Delić, Teo; Bilandžija, Helena; Pavlek, Martina; Komerički, Ana; Dražina, Tvrtko; Jalžić, Branko; Ozimec, Roman; Slapnik, Rajko; Bedek, Jana (2023) Subterranean Fauna of the Lukina Jama–Trojama Cave System in Croatia: The Deepest Cave in the Dinaric Karst. Diversity, 15 (6). ISSN 1424-2818

Mammola, Stefano; Malumbres-Olarte, Jagoba; Arabesky, Valeria; Barrales-Alcala, Diego Alejandro; Barrion-Dupo, Aimee Lynn; Benamu, Marco Antonio; Bird, Tharina L.; Bogomolova, Maria; Cardoso, Pedro; Chatzaki, Maria; Cheng, Ren-Chung; Chu, Tien-Ai; Classen-Rodriguez, Leticia M.; Cupic, Iva; Dhiya'ulhaq, Naufal Urfi; Picard, Andre-Philippe Drapeau; El-Hennawy, Hisham K.; Elverici, Mert; Fukushima, Caroline S.; Ganem, Zeana; Gavish-Regev, Efrat; Gonnye, Naledi T.; Hacala, Axel; Haddad, Charles R.; Hesselberg, Thomas; Ho, Tammy Ai Tian; Into, Thanakorn; Isaia, Marco; Jayaraman, Dharmaraj; Karuaera, Nanguei; Khalap, Rajashree; Khalap, Kiran; Kim, Dongyoung; Korhonen, Tuuli; Kralj-Fiser, Simona; Land, Heidi; Lin, Shou-Wang; Loboda, Sarah; Lowe, Elizabeth; Lubin, Yael; Martinez, Alejandro; Mbo, Zingisile; Milicic, Marija; Kioko, Grace Mwende; Nanni, Veronica; Norma-Rashid, Yusoff; Nwankwo, Daniel; Painting, Christina J.; Pang, Aleck; Pantini, Paolo; Pavlek, Martina; Pearce, Richard; Petcharad, Booppa; Petillon, Julien; Raberahona, Onjaherizo Christian; Saarinen, Joni A.; Segura-Hernandez, Laura; Sentenska, Lenka; Uhl, Gabriele; Walker, Leilani; Warui, Charles M.; Wisniewski, Konrad; Zamani, Alireza; Scott, Catherine; Chuang, Angela (2022) An expert-curated global database of online newspaper articles on spiders and spider bites. Scientific data, 9 (1). ISSN 2052-4463

(ERGA) Formenti, Giulio ; Theissinger, Kathrin ; Fernandes, Carlos ; Bista, Iliana ; Bombarely, Aureliano ; Bleidorn, Christoph ; Ciofi, Claudio ; Crottini, Angelica ; Godoy, José A. ; Höglund, Jacob ; Malukiewicz, Joanna ; Mouton, Alice ; Oomen, Rebekah A. ; Paez, Sadye ; Palsbøll, Per J. ; Pampoulie, Christophe ; Ruiz-López, María J. ; Svardal, Hannes ; Theofanopoulou, Constantina ; de Vries, Jan ; Waldvogel, Ann-Marie ; Zhang, Guojie ; Mazzoni, Camila J. ; Jarvis, Erich D. ; Bálint, Miklós ; Formenti, Giulio ; Theissinger, Kathrin ; Fernandes, Carlos ; Bista, Iliana ; Bombarely, Aureliano ; Bleidorn, Christoph ; Čiampor, Fedor ; Ciofi, Claudio ; Crottini, Angelica ; Godoy, José A. ; Hoglund, Jacob ; Malukiewicz, Joanna ; Mouton, Alice ; Oomen, Rebekah A. ; Paez, Sadye ; Palsbøll, Per ; Pampoulie, Christophe ; Ruiz-López, María José ; Svardal, Hannes ; Theofanopoulou, Constantina ; de Vries, Jan ; Waldvogel, Ann-Marie ; Zhang, Goujie ; Mazzoni, Camila J. ; Jarvis, Erich ; Bálint, Miklós ; Aghayan, Sargis A. ; Alioto, Tyler S. ; Almudi, Isabel ; Alvarez, Nadir ; Alves, Paulo C. ; Amorim, Isabel R. ; Antunes, Agostinho ; Arribas, Paula ; Baldrian, Petr ; Berg, Paul R. ; Bertorelle, Giorgio ; Böhne, Astrid ; Bonisoli-Alquati, Andrea ; Boštjančić, Ljudevit L. ; Boussau, Bastien ; Breton, Catherine M. ; Buzan, Elena ; Campos, Paula F. ; Carreras, Carlos ; Castro, L. FIlipe ; Chueca, Luis J. ; Conti, Elena ; Cook-Deegan, Robert ; Croll, Daniel ; Cunha, Mónica V. ; Delsuc, Frédéric ; Dennis, Alice B. ; Dimitrov, Dimitar ; Faria, Rui ; Favre, Adrien ; Fedrigo, Olivier D. ; Fernández, Rosa ; Ficetola, Gentile Francesco ; Flot, Jean-François ; Gabaldón, Toni ; Galea Agius, Dolores R. ; Gallo, Guido R. ; Giani, Alice M. ; Gilbert, M. Thomas P. ; Grebenc, Tine ; Guschanski, Katerina ; Guyot, Romain ; Hausdorf, Bernhard ; Hawlitschek, Oliver ; Heintzman, Peter D. ; Heinze, Berthold ; Hiller, Michael ; Husemann, Martin ; Iannucci, Alessio ; Irisarri, Iker ; Jakobsen, Kjetill S. ; Jentoft, Sissel ; Klinga, Peter ; Kloch, Agnieszka ; Kratochwil, Claudius F. ; Kusche, Henrik ; Layton, Kara K.S. ; Leonard, Jennifer A. ; Lerat, Emmanuelle ; Liti, Gianni ; Manousaki, Tereza ; Marques-Bonet, Tomas ; Matos-Maraví, Pável ; Matschiner, Michael ; Maumus, Florian ; Mc Cartney, Ann M. ; Meiri, Shai ; Melo-Ferreira, José ; Mengual, Ximo ; Monaghan, Michael T. ; Montagna, Matteo ; Mysłajek, Robert W. ; Neiber, Marco T. ; Nicolas, Violaine ; Novo, Marta ; Ozretić, Petar ; Palero, Ferran ; Pârvulescu, Lucian ; Pascual, Marta ; Paulo, Octávio S. ; Pavlek, Martina ; Pegueroles, Cinta ; Pellissier, Loïc ; Pesole, Graziano ; Primmer, Craig R. ; Riesgo, Ana ; Rüber, Lukas ; Rubolini, Diego ; Salvi, Daniele ; Seehausen, Ole ; Seidel, Matthias ; Secomandi, Simona ; Studer, Bruno ; Theodoridis, Spyros ; Thines, Marco ; Urban, Lara ; Vasemägi, Anti ; Vella, Adriana ; Vella, Noel ; Vernes, Sonja C. ; Vernesi, Cristiano ; Vieites, David R. ; Waterhouse, Robert M. ; Wheat, Christopher W. ; Wörheide, Gert ; Wurm, Yannick ; Zammit, Gabrielle (2022) The era of reference genomes in conservation genomics. Trends in ecology & evolution, 37 (3). pp. 197-202. ISSN 0169-5347

Mammola, Stefano; Meierhofer, Melissa B.; Borges, Paulo A.V.; Colado, Raquel; Culver, David C.; Deharveng, Louis; Delić, Teo; Di Lorenzo, Tiziana; Dražina, Tvrtko; Ferreira, Rodrigo L.; Fiasca, Barbara; Fišer, Cene; Galassi, Diana M. P.; Garzoli, Laura; Gerovasileiou, Vasilis; Griebler, Christian; Halse, Stuart; Howarth, Francis G.; Isaia, Marco; Johnson, Joseph S.; Komerički, Ana; Martínez, Alejandro; Milano, Filippo; Moldovan, Oana T.; Nanni, Veronica; Nicolosi, Giuseppe; Niemiller, Matthew L.; Pallarés, Susana; Pavlek, Martina; Piano, Elena; Pipan, Tanja; Sanchez‐Fernandez, David; Santangeli, Andrea; Schmidt, Susanne I.; Wynne, J. Judson; Zagmajster, Maja; Zakšek, Valerija; Cardoso, Pedro (2022) Towards evidence‐based conservation of subterranean ecosystems. Biological reviews, 97 (4). pp. 1476-1510. ISSN 1464-7931

Mammola, Stefano; Pavlek, Martina; Huber, Bernhard A.; Isaia, Marco; Ballarin, Francesco; Tolve, Marco; Čupić, Iva; Hesselberg, Thomas; Lunghi, Enrico; Mouron, Samuel; Graco-Roza, Caio; Cardoso, Pedro (2022) A trait database and updated checklist for European subterranean spiders. Scientific Data, 9 (1). ISSN 2052-4463

Milano, Filippo; Borio, Luca; Komposch, Christian; Mammola, Stefano; Pantini, Paolo; Pavlek, Martina; Isaia, Marco (2022) Species conservation profiles of the endemic spiders Troglohyphantes (Araneae, Linyphiidae) from the Alps and the north-western Dinarides. Biodiversity Data Journal, 10 . ISSN 1314-2828

Pavlek, Martina; Gauthier, Jérémy; Tonzo, Vanina; Bilat, Julia; Arnedo, Miquel A.; Alvarez, Nadir (2022) Life-history traits drive spatial genetic structuring in Dinaric cave spiders. Frontiers in Ecology and Evolution, 10 . ISSN 2296-701X

Mammola, Stefano; Malumbres-Olarte, Jagoba; Arabesky, Valeria; Barrales-Alcalá, Diego Alejandro; Barrion-Dupo, Aimee Lynn; Benamú, Marco Antonio; Bird, Tharina L.; Bogomolova, Maria; Cardoso, Pedro; Chatzaki, Maria; Cheng, Ren-Chung; Chu, Tien-Ai; Classen-Rodríguez, Leticia M.; Čupić, Iva; Dhiya’ulhaq, Naufal Urfi; Drapeau Picard, André-Philippe; El-Hennawy, Hisham K.; Elverici, Mert; Fukushima, Caroline S.; Ganem, Zeana; Gavish-Regev, Efrat; Gonnye, Naledi T.; Hacala, Axel; Haddad, Charles R.; Hesselberg, Thomas; Tian Ho, Tammy Ai; Into, Thanakorn; Isaia, Marco; Jayaraman, Dharmaraj; Karuaera, Nanguei; Khalap, Rajashree; Khalap, Kiran; Kim, Dongyoung; Korhonen, Tuuli; Kralj-Fišer, Simona; Land, Heidi; Lin, Shou-Wang; Loboda, Sarah; Lowe, Elizabeth; Lubin, Yael; Martínez, Alejandro; Mbo, Zingisile; Miličić, Marija; Kioko, Grace Mwende; Nanni, Veronica; Norma-Rashid, Yusoff; Nwankwo, Daniel; Painting, Christina J.; Pang, Aleck; Pantini, Paolo; Pavlek, Martina; Pearce, Richard; Petcharad, Booppa; Pétillon, Julien; Raberahona, Onjaherizo Christian; Russo, Philip; Saarinen, Joni A.; Segura-Hernández, Laura; Sentenská, Lenka; Uhl, Gabriele; Walker, Leilani; Warui, Charles M.; Wiśniewski, Konrad; Zamani, Alireza; Chuang, Angela; Scott, Catherine (2022) The global spread of misinformation on spiders. Current Biology, 32 (16). R871-R873. ISSN 0960-9822

Huber, Bernhard A.; Pavlek, Martina; Komnenov, Marjan (2021) Revision of the spider genus Stygopholcus (Araneae, Pholcidae), endemic to the Balkan Peninsula. European Journal of Taxonomy, 752 . pp. 1-60. ISSN 2118-9773

Platania, Leonardo; Pavlek, Martina; Arnedo, Miquel (2020) Testing the monophyly of the ground-dweller spider genus Harpactea Bristowe, 1939 (Araneae, Dysderidae) with the description of three new species. Systematics and biodiversity, 18 (7). pp. 688-707. ISSN 1477-2000

Platania, Leonardo; Pavlek, Martina; Arnedo, Miquel (2020) Testing the monophyly of the ground-dweller spider genus Harpactea Bristowe, 1939 (Araneae, Dysderidae) with the description of three new species. Systematics and biodiversity, 18 (7). pp. 688-707. ISSN 1477-2000

Vojvoda Zeljko, Tanja; Pavlek, Martina; Meštrović, Nevenka; Plohl, Miroslav (2020) Satellite DNA‑like repeats are dispersed throughout the genome of the Pacific oyster Crassostrea gigas carried by Helentron non‑autonomous mobile elements. Scientific reports, 10 (1). ISSN 2045-2322

(HiddenLife) Pavlek, Martina; Mammola, Stefano (2020) Niche‐based processes explaining the distributions of closely related subterranean spiders. Journal of biogeography, 48 (1). pp. 118-133. ISSN 0305-0270

(CAWEB) Mammola, Stefano; Cardoso, Pedro; Angyal, Dorottya; Balázs, Gergely; Blick, Theo; Brustel, Hervé; Carter, Julian; Ćurčić, Srećko; Danflous, Samuel; Dányi, László; Déjean, Sylvain; Deltshev, Christo; Elverici, Mert; Fernández, Jon; Gasparo, Fulvio; Komnenov, Marjan; Komposch, Christian; Kováč, L’ubomír; Kunt, Kadir; Mock, Andrej; Moldovan, Oana; Naumova, Maria; Pavlek, Martina; Prieto, Carlos; Ribera, Carles; Rozwałka, Robert; Růžička, Vlastimil; Vargovitsh, Robert; Zaenker, Stefan; Isaia, Marco (2019) Continental data on cave-dwelling spider communities across Europe (Arachnida: Araneae). Biodiversity Data Journal, 7 . ISSN 1314-2836

Mammola, Stefano; Cardoso, Pedro; Angyal, Dorottya; Balázs, Gergely; Blick, Theo; Brustel, Hervé; Carter, Julian; Ćurčić, Srećko; Danflous, Samuel; Dányi, László; Déjean, Sylvain; Deltshev, Christo; Elverici, Mert; Fernández, Jon; Gasparo, Fulvio; Komnenov, Marjan; Komposch, Christian; Kováč, L'ubomír; Kunt, Kadir Boğaç; Mock, Andrej; Moldovan, Oana Teodora; Naumova, Maria; Pavlek, Martina; Prieto, Carlos E.; Ribera, Carles; Rozwałka, Robert; Růžička, Vlastimil; Vargovitsh, Robert S.; Zaenker, Stefan; Isaia, Marco (2019) Local- versus broad-scale environmental drivers of continental β-diversity patterns in subterranean spider communities across Europe. Proceedings of the Royal Society B: Biological Sciences, 286 (1914). pp. 1-9. ISSN 0962-8452

Lukić, Marko; Delić, Teo; Pavlek, Martina; Deharveng, Louis; Zagmajster, Maja (2019) Distribution pattern and radiation of the European subterranean genus Verhoeffiella (Collembola, Entomobryidae). Zoologica scripta, 49 (1). pp. 86-100. ISSN 0300-3256

Mammola, Stefano; Cardoso, Pedro; Culver, David C.; Deharveng, Louis; Ferreira, Rodrigo L.; Fišer, Cene; Galassi, Diana M. P.; Griebler, Christian; Halse, Stuart; Humphreys, William F.; Isaia, Marco; Malard, Florian; Martínez, Alejandro; Moldovan, Oana T.; Niemiller, Matthew L.; Pavlek, Martina; Reboleira, Ana Sofia P. S.; Souza-Silva, Marconi; Teeling, Emma C.; Wynne, J. Judson; Zagmajster, Maja (2019) Scientists' Warning on the Conservation of Subterranean Ecosystems. Bioscience, 69 (8). pp. 641-650. ISSN 0006-3568

Mammola, Stefano; Cardoso, Pedro; Ribera, Carles; Pavlek, Martina; Isaia, Marco (2017) A synthesis on cave-dwelling spiders in Europe. Journal of zoological systematics and evolutionary research, 56 (3). pp. 301-316. ISSN 0947-5745

Pavlek, Martina; Carles, Ribera (2017) Kryptonesticus deelemanae gen. et sp. nov. (Araneae, Nesticidae), with notes on the Mediterranean cave species. European Journal of Taxonomy, 262 . pp. 1-27. ISSN 2118-9773

Andersen, Trond; Baranov, Viktor; Hagenlund, Linn Katrine; Ivković, Marija; Kvifte, Gunnar Mikalsen; Pavlek, Martina (2016) Blind Flight? A New Troglobiotic Orthoclad (Diptera, Chironomidae) from the Lukina Jama – Trojama Cave in Croatia. PLoS ONE, 11 (4). e0152884/1- e0152884/15. ISSN 1932-6203

Pavlek, Martina; Gelfand, Yevgeniy; Plohl, Miroslav; Meštrović, Nevenka (2015) Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms. DNA Research, 22 (6). pp. 1-15. ISSN 1340-2838

Meštrović, Nevenka; Pavlek, Martina; Car, Ana; Castagnone-Sereno, Philippe; Abad, Pierre; Plohl, Miroslav (2013) Conserved DNA motifs, including the CENP-B box-like, are involved in satellite DNA array rearrangements. PLoS ONE, 8 (6). e67328/1-e67328/10. ISSN 1932-6203

Meštrović, Nevenka; Pavlek, Martina; Car, Ana; Castagnone-Sereno, Philippe; Abad, Pierre; Plohl, Miroslav (2013) Conserved DNA Motifs, Including the CENP-B Box- like, Are Possible Promoters of Satellite DNA Array Rearrangements in Nematodes. PLoS ONE, 8 (6). e6732-1. ISSN 1932-6203

Pavlek, Martina; Ozimec, Roman (2009) New cave-dwelling species of genus Troglohyphantes (Araneae, Linyphiidae) for Croatian fauna. Natura Croatica : periodicum Musei historiae naturalis Croatici, 18 (1). pp. 29-37. ISSN 1330-0520

Unpublished conference/workshop items or lecture materials

Pavlek, Martina; Šatović, Eva; Pezer, Željka Kopanje po genomskom "smeću" (Uloga nekodirajućeg dijela genoma). In: Znanstveni susreti 3. vrste (7 July 2011 - 8 July 2011) Zagreb, Hrvatska. (Unpublished)

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