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Article

Afgan, Enis; Baker, Dannon; van den Beek, Marius; Blankenberg, Daniel; Bouvier, Dave; Čech, Martin; Chilton, John; Clements, Dave; Coraor, Nate; Eberhard, Carl; Grüning, Björn; Guerler, Aysam; Hillman-Jackson, Jennifer; Von Kuster, Greg; Rasche, Eric; Soranzo, Nicola; Turaga, Nitesh; Taylor, James; Nekrutenko, Anton; Goecks, Jeremy (2016) The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research, 44 (W1). W1-3. ISSN 0305-1048

Forer, Lukas; Afgan, Enis; Weissenteiner, Hansi; Davidović, Davor; Specht, Guenther; Kronenberg, Florian; Schoenherr, Sebastian (2016) CLOUDFLOW - Enabling Faster Biomedical Pipelines with Mapreduce and Spark. Scalable Computing: Practice and Experience, 17 (2). pp. 103-114. ISSN 1895-1767

Skala, Karolj; Davidović, Davor; Afgan, Enis; Sović, Ivan; Šojat, Zorislav (2015) Scalable distributed computing hierarchy: cloud, fog and dew computing. Open Journal of Cloud Computing (OJCC), 2 (1). pp. 16-24. ISSN 2199-1987

Afgan, Enis; Sloggett, Clare; Goonasekera, Nuwan; Makunin, Igor; Benson, Derek; Crowe, Mark; Gladman, Simon; Kowsar, Yousef; Pheasant, Michael; Horst, Ron; Lonie, Andrew (2015) Genomics Virtual Laboratory: a practical bioinformatics workbench for the cloud. PLoS ONE, 10 (10). 0140829/1-0140829/20. ISSN 1932-6203

Blankenberg, Daniel; Kuster, Gregory Von; Bouvier, Emil; Baker, Dannon; Afgan, Enis; Stoler, Nicholas; Taylor, James; Nekrutenko, Anton (2014) Dissemination of scientific software with Galaxy ToolShed. Genome Biology, 15 (2). pp. 403-406. ISSN 1474-7596

Afgan, Enis; Chapman, Brad; Taylor, James (2012) CloudMan as a platform for tool, data, and analysis distribution. BMC bioinformatics, 13 (315). pp. 1-7. ISSN 1471-2105

Conference or workshop item published in conference proceedings

Forer, Lukas; Afgan, Enis; Weißensteiner, Hansi; Davidović, Davor; Specht, Gűnter; Kronenberg, Florian; Schönherr, Sebastian (2015) Cloudflow – A Framework for MapReduce Pipeline Development in Biomedical Research. In: Biljanović, Petar, (ed.) MIPRO 2015 38th International Convention Proceedings. Rijeka, Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO, pp. 185-190 .

Forer, Lukas; Lipić, Tomislav; Schönherr, Sebastian; Weissensteiner, Hansi; Davidović, Davor; Kronenberg, Florian; Afgan, Enis (2014) Delivering Bioinformatics MapReduce Applications in the Cloud. In: Biljanović, Petar, (ed.) MIPRO 2014 37th International Convention Proceedings. pp. 388-392 .

Afgan, Enis; Skala, Karolj; Davidović, Davor; Lipić, Tomislav; Sović, Ivan (2012) CloudMan as a tool execution framework for the cloud. In: Biljanović, Petar; Skala, Karolj, (eds.) MIPRO, 2012 Proceedings of the 35th International Convention. pp. 437-441 .

Unpublished conference/workshop items or lecture materials

Schönherr, Sebastian; Forer, Lukas; Davidović, Davor; Weissensteiner, Hansi; Kronenberg, Florian; Afgan, Enis Bringing Hadoop into Bioinformatics with Cloudgene and CloudMan. In: 16th Annual Bioinformatics Open Source Conference, BOSC 2015 (10 July 2015 - 11 July 2015) Dublin, Ireland. (Unpublished)

Skala, Karolj; Davidović, Davor; Afgan, Enis; Sović, Ivan; Lipić, Tomislav; Cetinić, Eva Scalable Distributed Computing Common Hierarchy. In: EGI Community Forum (9 November 2015 - 13 November 2015) Bari, Italy. (Unpublished)