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Hydrogen Bond Dynamics of Histamine Monocation in Aqueous Solution: How Geometric Parameters Influence the Hydrogen Bond Strength

Pirc, Gordana; Stare, Jernej; Mavri, Janez; Vianello, Robert (2014) Hydrogen Bond Dynamics of Histamine Monocation in Aqueous Solution: How Geometric Parameters Influence the Hydrogen Bond Strength. Croatica chemica acta, 87 (4). pp. 397-405. ISSN 0011-1643

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Abstract

Chemometric statistical approaches involving multiple linear regression (MLR) and principal component analysis (PCA) were employed on a set of 42 distinct snapshot structures of the physiological histamine monocation in aqueous solution along the Car-Parrinello molecular dynamics trajectory, in order to obtain a better insight into the relationship between the geometry parameters of the system and the resulting νNH stretching frequencies. A simple 2D linear regression of νNH with Namino···Owater distances gave a very poor correlation (R2 = 0.42), but both MLR and PCA with the inclusion of four directly bonded water molecules offered a notably predictive model that is even able to distinguish two classes of structures based on the Cl- counterion position. Taking into account waters from the first, second and third solvation shells, sequentially diminished the overall predictive ability of the model, yet increased the number of useful predictors that, in the largest model with 51 solvent molecules, all correspond to bulk water, implying that both chemometric methods are consistent in suggesting that fundamental histamine N–H stretching vibrations are very complex in nature and strongly coupled to the fluctuating environment.

Item Type: Article
Uncontrolled Keywords: hydrogen bond, hystamine monocation, multiple linear regresion, principal component analysis
Subjects: NATURAL SCIENCES > Chemistry
NATURAL SCIENCES > Chemistry > Organic Chemistry
Divisions: Division of Organic Chemistry and Biochemistry
Projects:
Project titleProject leaderProject codeProject type
Broenstedove i Lewisove kiseline i baze u kemiji i biokemiji[237604] Robert Vianello098-0982933-2932MZOS
Depositing User: Sofija Konjević
Date Deposited: 10 Mar 2015 13:46
Last Modified: 17 Mar 2015 11:23
URI: http://fulir.irb.hr/id/eprint/1710
DOI: 10.5562/cca2512

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