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Phan, Mai H. Q.; Zehnder, Tobias; Puntieri, Fiona; Magg, Andreas; Majchrzycka, Blanka; Antonović, Milan; Wieler, Hannah; Lo, Bai-Wei; Baranašić, Damir; Lenhard, Boris; Müller, Ferenc; Vingron, Martin; Ibrahim, Daniel M. (2025) Conservation of regulatory elements with highly diverged sequences across large evolutionary distances. Nature Genetics, 57 (6). pp. 1524-1534. ISSN 1061-4036

Amblard, Irène; Baranašić, Damir; Xie, Sheila Q.; Moyon, Benjamin; Percharde, Michelle; Lenhard, Boris; Metzis, Vicki (2025) A dual enhancer-attenuator element ensures transient Cdx2 expression during mouse posterior body formation. Developmental Cell, 60 (18). 2407-2419.e6. ISSN 15345807

Rauluseviciute, Ieva; Riudavets-Puig, Rafael; Blanc-Mathieu, Romain; Castro-Mondragon, Jaime A; Ferenc, Katalin; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jérémy; Chèneby, Jeanne; Baranašić, Damir; Khan, Aziz; Fornes, Oriol; Gundersen, Sveinung; Johansen, Morten; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Wasserman, Wyeth W; Parcy, François; Mathelier, Anthony (2024) JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Research, 52 (D1). D174-D182. ISSN 0305-1048

Jimenez Gonzalez, Ada; Baranašić, Damir; Müller, Ferenc (2023) Zebrafish regulatory genomic resources for disease modelling and regeneration. Disease Models & Mechanisms, 16 (8). ISSN 1754-8403