On Map Representations of DNA

Randić, Milan; Horvat, Boris; Jaklič, Gašper; Plavšić, Dejan; Pisanski, Tomaž (2013) On Map Representations of DNA. Croatica Chemica Acta, 86 (4). pp. 519-529. ISSN 0011-1643

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Abstract

We have constructed graphical (qualitative and visual) representations of DNA sequences as 2D maps and their numerical (quantitative and computational) analysis. The maps are obtained by transforming the four-letter sequences (where letters represent the four nucleic bases) via a spiral representation over triangular and square cells grids into a four-color map. The so constructed maps are then represented by distance matrices. We consider the use of several matrix invariants as DNA descriptors for determining the degree of similarity of a selection of DNA sequences.

Item Type:	Article
Uncontrolled Keywords:	DNA graphical representation ; virtual genetic code ; numerical representation ; four color map ; distance matrix of DNA ; DNA similarity ; DNA descriptors
Subjects:	NATURAL SCIENCES > Chemistry
Divisions:	NMR Center
Projects:	Project title Project leader Project code Project type Spektroskopija NMR i modeliranje bioaktivnih molekula [76010] Dejan Plavšić 098-0982929-2917 MZOS
Depositing User:	Dejan Plavšić
Date Deposited:	17 Apr 2014 11:17
URI:	http://fulir.irb.hr/id/eprint/1329
DOI:	10.5562/cca2338

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